Tassel Software Download For Mac

Tassel Software Download

Download and Execute for your Operating System Tassel 5.0 Standalone / C o mman d L i n e (T assel Pi p el i n e) 1) Download the “Standalone”.zip and unzip it on your computer. 2) Follow the “Using Git” instructions to make getting future updates very easy (Highly Recommended!). TASSEL is a software package used to evaluate traits associations, evolutionary. Patterns, and linkage disequilibrium. Strengths of this software include: 1. The opportunity for a number of new and powerful statistical approaches to association mapping such as a.

Tassel's Java Web Start Links No Longer
Supported Due to Java Security Issues.

Tassel Version 4.0 Standalone
(Build: July 30, 2015 Requires: Java 1.7)
(Deprecated GBS Pipeline)

Using Git - Recommended!
Download (Click on 'Download Snapshot')

Tassel Version 3.0 Standalone
(Build: March 3, 2016 Requires: Java 1.6)
(Deprecated GBS Pipeline)

Using Git - Recommended!
Download (Click on 'Download Snapshot')

Tassel Documentation

Tassel Pipeline Documentation

Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. (2007) TASSEL: Software for association mapping of complex traits in diverse samples.Bioinformatics23:2633-2635.
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage disequilibrium. Strengths of this software:
1. It provides a number of new and powerful statistical approaches to association mapping such as a General Linear Model (GLM) and Mixed Linear Model (MLM). MLM is an implementation of the technique which our recently published Nature Genetics paper - Unified Mixed-Model Method for Association Mapping - which reduces Type I error in association mapping with complex pedigrees, families, founding effects and population structure.
2. Ability to handle a wide range of indels (insertion & deletions). Most software package ignore this type of polymorphism, however, in some species (like maize) this is the most common type of polymorphism.